Jan Dirk Van Elsas : rechercher sur Z-Library

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1

Mechanisms that promote bacterial fitness in fungal-affected soil microhabitats

Rashid Nazir, Jan A. Warmink, Hidde Boersma, Jan Dirk Van Elsas

Journal:

FEMS Microbiology Ecology

Année:

2010

Langue:

english

Fichier:

PDF, 289 KB

english, 2010

2

Extraction of ribosomal RNA and genomic DNA from soil for studying the diversity of the indigenous bacterial community.

Gabriela Frois Duarte, Alexandre Soares Rosado, Lucy Seldin, Anneke C Keijzer-Wolters, Jan Dirk van Elsas

Journal:

Journal of Microbiological Methods

Année:

1998

Langue:

english

Fichier:

PDF, 458 KB

english, 1998

3

Microbe-mediated processes as indicators to establish the normal operating range of soil functioning

Pereira e Silva, Michele C., Semenov, Alexander V., Schmitt, Heike, van Elsas, Jan Dirk, Salles, Joana Falcão

Journal:

Soil Biology and Biochemistry

Année:

2013

Langue:

english

Fichier:

PDF, 576 KB

english, 2013

4

Chemotaxis and adherence to fungal surfaces are key components of the behavioral response of Burkholderia terrae BS001 to two selected soil fungi

Haq, Irshad Ul, Calixto, Renata Oliveira da Rocha, Yang, Pu, dos Santos, Giulia Maria Pires, Barreto-Bergter, Eliana, van Elsas, Jan Dirk

Journal:

FEMS Microbiology Ecology

Année:

2016

Langue:

english

Fichier:

PDF, 803 KB

english, 2016

5

Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate

Cortes-Tolalpa, Larisa, Norder, Justin, van Elsas, Jan Dirk, Falcao Salles, Joana

Journal:

Applied Microbiology and Biotechnology

Année:

2018

Langue:

english

Fichier:

PDF, 804 KB

english, 2018

6

The Ecological Role of Type Three Secretion Systems in the Interaction of Bacteria with Fungi in Soil and Related Habitats Is Diverse and Context-Dependent

Nazir, Rashid, Mazurier, Sylvie, Yang, Pu, Lemanceau, Philippe, van Elsas, Jan Dirk

Journal:

Frontiers in Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2017

7

The ecology of transfer of mobile genetic elements

Jan Dirk van Elsas, Mark J Bailey

Journal:

FEMS Microbiology Ecology

Année:

2002

Langue:

english

Fichier:

PDF, 260 KB

english, 2002

8

Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes

Paolina Garbeva, Johannes Antonie van Veen, Jan Dirk van Elsas

Journal:

FEMS Microbiology Ecology

Année:

2004

Langue:

english

Fichier:

PDF, 436 KB

english, 2004

9

Soil and Cultivar Type Shape the Bacterial Community in the Potato Rhizosphere

Özgül İnceoğlu, Joana Falcão Salles, Jan Dirk van Elsas

Journal:

Microbial Ecology

Année:

2012

Langue:

english

Fichier:

PDF, 494 KB

english, 2012

10

Soil-specific limitations for access and analysis of soil microbial communities by metagenomics

Nathalie Lombard, Emmanuel Prestat, Jan Dirk van Elsas, Pascal Simonet

Journal:

FEMS Microbiology Ecology

Année:

2011

Langue:

english

Fichier:

PDF, 527 KB

english, 2011

11

Impact of incorporated fresh 13C potato tissues on the bacterial and fungal community composition of soil

Alexander V. Semenov, Michele C. Pereira e Silva, Agnieszka E. Szturc-Koestsier, Heike Schmitt, Joana Falcão Salles, Jan Dirk van Elsas

Journal:

Soil Biology and Biochemistry

Année:

2012

Langue:

english

Fichier:

PDF, 446 KB

english, 2012

12

Structural diversity of microorganisms in chemically perturbed soil assessed by molecular and cytochemical approaches

Jacek Kozdrój, Jan Dirk van Elsas

Journal:

Journal of Microbiological Methods

Année:

2001

Langue:

english

Fichier:

PDF, 138 KB

english, 2001

13

Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis

Jan Dirk van Elsas, Gabriela Frois Duarte, Anneke Keijzer-Wolters, Eric Smit

Journal:

Journal of Microbiological Methods

Année:

2000

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2000

14

Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis.

Antonio Gelsomino, Anneke C Keijzer-Wolters, Giovanni Cacco, Jan Dirk van Elsas

Journal:

Journal of Microbiological Methods

Année:

1999

Langue:

english

Fichier:

PDF, 947 KB

english, 1999

15

Molecular Microbial Ecology Manual || Polymerase chain reaction (PCR) analysis of soil microbial DNA

Akkermans, Antoon D. L., Van Elsas, Jan Dirk, De Bruijn, Frans J.

Année:

1995

Langue:

english

Fichier:

PDF, 1.07 MB

english, 1995

16

IncP-1 and PromA Group Plasmids Are Major Providers of Horizontal Gene Transfer Capacities Across Bacteria in the Mycosphere of Different Soil Fungi

Zhang, Miaozhi, Visser, Sander, Pereira e Silva, Michele C, van Elsas, Jan Dirk

Journal:

Microbial Ecology

Année:

2015

Langue:

english

Fichier:

PDF, 376 KB

english, 2015

17

Molecular Microbial Ecology Manual || Antibiotic resistance as a marker for tracking bacteria in the soil ecosystem

Akkermans, Antoon D. L., Van Elsas, Jan Dirk, De Bruijn, Frans J.

Année:

1996

Langue:

english

Fichier:

PDF, 1.57 MB

english, 1996

18

Spatial and Temporal Variation of Archaeal, Bacterial and Fungal Communities in Agricultural Soils

Pereira e Silva, Michele C., Dias, Armando Cavalcante Franco, van Elsas, Jan Dirk, Salles, Joana Falcão, Ibekwe, A. Mark

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 574 KB

english, 2012

19

Burkholderia terrae BS001 migrates proficiently with diverse fungal hosts through soil and provides protection from antifungal agents

Nazir, Rashid, Tazetdinova, Diana I., van Elsas, Jan Dirk

Journal:

Frontiers in Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 929 KB

english, 2014

20

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation

Jurburg, Stephanie D., Nunes, Inês, Brejnrod, Asker, Jacquiod, Samuel, Priemé, Anders, Sørensen, Søren J., Van Elsas, Jan Dirk, Salles, Joana F.

Journal:

Frontiers in Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 4.43 MB

english, 2017

21

The Response of Paraburkholderia terrae Strains to Two Soil Fungi and the Potential Role of Oxalate

Haq, Irshad Ul, Zwahlen, Reto Daniel, Yang, Pu, van Elsas, Jan Dirk

Journal:

Frontiers in Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 2.98 MB

english, 2018

22

Bacterial soil community in a Brazilian sugarcane field

Francisco Dini-Andreote, Fernando Dini Andreote, Rodrigo Costa, Rodrigo Gouvêa Taketani, Jan Dirk van Elsas, Welington Luiz Araújo

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2010

23

Cultivation of hitherto-uncultured bacteria belonging to theVerrucomicrobiasubdivision 1 from the potato (Solanum tuberosumL.) rhizosphere

Ulisses Nunes da Rocha, Fernando Dini Andreote, João Lúcio de Azevedo, Jan Dirk van Elsas, Leo S. van Overbeek

Journal:

Journal of Soils and Sediments

Année:

2010

Langue:

english

Fichier:

PDF, 281 KB

english, 2010

24

Microbial community response to a simulated hydrocarbon spill in mangrove sediments

Rodrigo Gouvêa Taketani, Natália Oliveira Franco, Alexandre Soares Rosado, Jan Dirk van Elsas

Journal:

Journal of Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 423 KB

english, 2010

25

Bacterial structure and characterization of plant growth promoting and oil degrading bacteria from the rhizospheres of mangrove plants

Flávia Lima do Carmo, Henrique Fragoso dos Santos, Edir Ferreira Martins, Jan Dirk van Elsas, Alexandre Soares Rosado, Raquel Silva Peixoto

Journal:

Journal of Microbiology

Année:

2011

Langue:

english

Fichier:

PDF, 605 KB

english, 2011

26

Seasonal variations in the diversity and abundance of diazotrophic communities across soils

Michele C. Pereira e Silva, Alexander V. Semenov, Jan Dirk van Elsas, Joana Falcão Salles

Journal:

FEMS Microbiology Ecology

Année:

2011

Langue:

english

Fichier:

PDF, 282 KB

english, 2011

27

Verrucomicrobia subdivision 1 strains display a difference in the colonization of the leek (Allium porrum) rhizosphere

Ulisses Nunes da Rocha, Jan Dirk van Elsas, Leonard Simon van Overbeek

Journal:

FEMS Microbiology Ecology

Année:

2011

Langue:

english

Fichier:

PDF, 455 KB

english, 2011

28

Survival of genetically marked Escherichia coli O157:H7 in soil as affected by soil microbial community shifts

van Elsas, Jan Dirk, Hill, Patrick, Chroňáková, Alica, Grekova, Martyna, Topalova, Yana, Elhottová, Dana, Krištůfek, Václav

Journal:

The ISME Journal

Année:

2007

Langue:

english

Fichier:

PDF, 156 KB

english, 2007

29

TerraGenome: a consortium for the sequencing of a soil metagenome

Vogel, Timothy M., Simonet, Pascal, Jansson, Janet K., Hirsch, Penny R., Tiedje, James M., van Elsas, Jan Dirk, Bailey, Mark J., Nalin, Renaud, Philippot, Laurent

Journal:

Nature Reviews Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 122 KB

english, 2009

30

Advantages of the metagenomic approach for soil exploration: reply from Vogel et al.

Vogel, Timothy M., Hirsch, Penny R., Simonet, Pascal, Jansson, Janet K., Tiedje, James M., van Elsas, Jan Dirk, Nalin, Renaud, Philippot, Laurent, Bailey, Mark J.

Journal:

Nature Reviews Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 103 KB

english, 2009

31

Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens

Jan Dirk van Elsas, Paolina Garbeva, Joana Salles

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 128 KB

english, 2002

32

Bacterial dichloropropene degradation in soil; screening of soils and involvement of plasmids carrying the dhlA gene

Cees Verhagen, Eric Smit, Dick B. Janssen, Jan Dirk Van Elsas

Journal:

Soil Biology and Biochemistry

Année:

1995

Langue:

english

Fichier:

PDF, 1.19 MB

english, 1995

33

Real-time PCR detection of Holophagae (Acidobacteria) and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils

Ulisses Nunes da Rocha, Jan Dirk van Elsas, Leonard Simon van Overbeek

Journal:

Journal of Microbiological Methods

Année:

2010

Langue:

english

Fichier:

PDF, 362 KB

english, 2010

34

Response of the bacterial community to root exudates in soil polluted with heavy metals assessed by molecular and cultural approaches

Jacek Kozdrój, Jan Dirk van Elsas

Journal:

Soil Biology and Biochemistry

Année:

2000

Langue:

english

Fichier:

PDF, 621 KB

english, 2000

35

Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in Cerrado soil

Irene von der Weid, Edilson Paiva, Alberto Nóbrega, Jan Dirk van Elsas, Lucy Seldin

Journal:

Research in Microbiology

Année:

2000

Langue:

english

Fichier:

PDF, 456 KB

english, 2000

36

Structural diversity of microbial communities in arable soils of a heavily industrialised area determined by PCR-DGGE fingerprinting and FAME profiling

Jacek Kozdrój, Jan Dirk van Elsas

Journal:

Applied Soil Ecology

Année:

2001

Langue:

english

Fichier:

PDF, 290 KB

english, 2001

37

A ribosomal RNA gene intergenic spacer based PCR and DGGE fingerprinting method for the analysis of specific rhizobial communities in soil

Valéria Maia de Oliveira, Gilson Paulo Manfio, Heitor Luiz da Costa Coutinho, Anneke Christina Keijzer-Wolters, Jan Dirk van Elsas

Journal:

Journal of Microbiological Methods

Année:

2006

Langue:

english

Fichier:

PDF, 238 KB

english, 2006

38

Two- and three-domain bacterial laccase-like genes are present in drained peat soils

Luka Ausec, Jan Dirk van Elsas, Ines Mandic-Mulec

Journal:

Soil Biology and Biochemistry

Année:

2011

Langue:

english

Fichier:

PDF, 498 KB

english, 2011

39

The Selection Exerted by Oil Contamination on Mangrove Fungal Communities

Cristiane Cipola Fasanella, Armando Cavalcante Franco Dias, Janaina Rigonato, Marli de Fátima Fiore, Fábio Lino Soares Jr, Itamar Soares Melo, Aline Aparecida Pizzirani-Kleiner, Jan Dirk van Elsas, Fe

Journal:

Water, Air & Soil Pollution

Année:

2012

Langue:

english

Fichier:

PDF, 468 KB

english, 2012

40

Physical-chemical and microbiological changes in Cerrado Soil under differing sugarcane harvest management systems

Caio TCC Rachid, Marisa C Piccolo, Deborah Catharine A Leite, Fabiano C Balieiro, Heitor Luiz C Coutinho, Jan Dirk van Elsas, Raquel S Peixoto, Alexandre S Rosado

Journal:

BMC Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 412 KB

english, 2012

41

Shifts in soil bacterial communities associated with the potato rhizosphere in response to aromatic sulfonate amendments

İnceoğlu, Özgül, Sablayrolles, Caroline, van Elsas, Jan Dirk, Falcão Salles, Joana

Journal:

Applied Soil Ecology

Année:

2013

Langue:

english

Fichier:

PDF, 751 KB

english, 2013

42

Molecular Microbial Ecology Manual || Extraction of microbial DNA from sewage and manure slurries

Akkermans, Antoon D. L., Van Elsas, Jan Dirk, De Bruijn, Frans J.

Année:

1995

Langue:

english

Fichier:

PDF, 974 KB

english, 1995

43

Bacterial communities in chitin-amended soil as revealed by 16S rRNA gene based pyrosequencing

Cretoiu, Mariana Silvia, Kielak, Anna Maria, Schluter, Andreas, van Elsas, Jan Dirk

Journal:

Soil Biology and Biochemistry

Année:

2014

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2014

44

Special Issue: Soil Microbes and Plant Production || Horizontal Gene Transfer in the Phytosphere

Jan Dirk van Elsas, Sarah Turner and Mark J. Bailey

Journal:

New Phytologist

Année:

2003

Langue:

english

Fichier:

PDF, 610 KB

english, 2003

45

Effect of the Indigenous Microflora on the Development of Root and Crown Rot Caused by Pythium aphanidermatum in Cucumber Grown on Rockwool

Postma, Joeke, Willemsen-de Klein, Margarit J. E. I. M., van Elsas, Jan Dirk

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 311 KB

english, 2000

46

A novel salt-tolerant chitobiosidase discovered by genetic screening of a metagenomic library derived from chitin-amended agricultural soil

Cretoiu, Mariana Silvia, Berini, Francesca, Kielak, Anna Maria, Marinelli, Flavia, van Elsas, Jan Dirk

Journal:

Applied Microbiology and Biotechnology

Année:

2015

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2015

47

Plants impact structure and function of bacterial communities in Arctic soils

Kumar, Manoj, Männistö, Minna K., van Elsas, Jan Dirk, Nissinen, Riitta M.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.89 MB

english, 2016

48

The use of statistical tools in field testing of putative effects of genetically modified plants on nontarget organisms

Semenov, Alexander V., van Elsas, Jan Dirk, Glandorf, Debora C. M., Schilthuizen, Menno, de Boer, Willem F.

Journal:

Ecology and Evolution

Année:

2013

Langue:

english

Fichier:

PDF, 250 KB

english, 2013

49

The type three secretion system facilitates migration ofBurkholderia terraeBS001 in the mycosphere of two soil-borne fungi

Yang, Pu, Zhang, Miaozhi, Warmink, Jan Aaldrik, Wang, Miao, van Elsas, Jan Dirk

Journal:

Biology and Fertility of Soils

Année:

2016

Langue:

english

Fichier:

PDF, 679 KB

english, 2016

50

Transcriptional Responses of the BacteriumBurkholderia terraeBS001 to the Fungal HostLyophyllumsp. Strain Karsten under Soil-Mimicking Conditions

Haq, Irshad Ul, Dini-Andreote, Francisco, van Elsas, Jan Dirk

Journal:

Microbial Ecology

Année:

2017

Langue:

english

Fichier:

PDF, 738 KB

english, 2017